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UMAP gene cluster
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Chromosome
1
2
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8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AAK1
ENSSSCG00000008337
ENSG00000115977
AP2-associated protein kinase 1
Low tissue specificity
Detected in all
AATK
ENSSSCG00000017141
ENSG00000181409
Apoptosis associated tyrosine kinase
Group enriched
Detected in many
brain:
26.3
vagus nerve:
92.2
ABCC8
ENSSSCG00000013378
ENSG00000006071
ATP binding cassette subfamily C member 8
Group enriched
Detected in some
brain:
17.6
vagus nerve:
57.7
ABCG2
ENSSSCG00000009215
ENSG00000118777
ATP-binding cassette sub-family G member 2
Low tissue specificity
Detected in all
ABLIM2
ENSSSCG00000008721
ENSG00000163995
Actin binding LIM protein family member 2
Tissue enhanced
Detected in many
brain:
26.0
mouth:
18.9
skeletal muscle:
38.1
ABLIM3
ENSSSCG00000014430
ENSG00000173210
Actin binding LIM protein family member 3
Tissue enhanced
Detected in many
brain:
53.4
ACP6
ENSSSCG00000006697
ENSG00000162836
Acid phosphatase 6, lysophosphatidic
Low tissue specificity
Detected in all
ACVR1C
ENSSSCG00000015873
ENSG00000123612
Activin A receptor type 1C
Tissue enhanced
Detected in some
adipose tissue:
28.6
brain:
22.2
liver:
10.2
ADAMTS20
ENSSSCG00000000795
ENSG00000173157
A disintegrin and metalloproteinase with thrombospondin motifs 20 precursor
Tissue enhanced
Detected in many
heart:
36.3
pineal gland:
27.4
vagus nerve:
37.2
ADAMTS3
ENSSSCG00000038180
ENSG00000156140
ADAM metallopeptidase with thrombospondin type 1 motif 3
Tissue enhanced
Detected in many
cartilage:
37.5
ADAMTSL2
ENSSSCG00000026425
ENSG00000197859
ADAMTS like 2
Tissue enriched
Detected in many
cartilage:
78.7
ADAP1
ENSSSCG00000007547
ENSG00000105963
Arf-GAP with dual PH domain-containing protein 1
Tissue enhanced
Detected in many
brain:
45.0
stomach:
22.4
ADCY5
ENSSSCG00000027952
ENSG00000173175
Adenylate cyclase 5
Tissue enriched
Detected in many
brain:
73.5
ADD1
ENSSSCG00000008692
ENSG00000087274
Adducin 1
Low tissue specificity
Detected in all
ADGRL1
ENSSSCG00000013773
ENSG00000072071
Adhesion G protein-coupled receptor L1
Tissue enhanced
Detected in all
smooth muscle:
64.6
ADORA2B
ENSSSCG00000035051
ENSG00000170425
Adenosine A2b receptor
Tissue enhanced
Detected in all
upper respiratory system:
25.5
ADORA3
ENSSSCG00000006788
ENSG00000282608
Transmembrane and immunoglobulin domain containing 3 isoform 3
Group enriched
Detected in many
brain:
17.5
lymphoid tissue:
32.3
ADRA1B
ENSSSCG00000017041
ENSG00000170214
Adrenoceptor alpha 1B
Tissue enhanced
Detected in many
lymphoid tissue:
12.2
penis:
20.7
pineal gland:
21.9
AES
ENSSSCG00000032265
ENSG00000104964
Amino-terminal enhancer of split
Low tissue specificity
Detected in all
AGAP3
ENSSSCG00000025610
ENSG00000133612
ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Low tissue specificity
Detected in all
AGPAT4
ENSSSCG00000004033
ENSG00000026652
1-acyl-sn-glycerol-3-phosphate acyltransferase delta
Tissue enriched
Detected in many
brain:
52.4
AGT
ENSSSCG00000010184
ENSG00000135744
Angiotensinogen
Tissue enhanced
Detected in many
adipose tissue:
99.8
brain:
96.0
liver:
70.3
AIF1L
ENSSSCG00000034178
ENSG00000126878
Allograft inflammatory factor 1 like
Tissue enhanced
Detected in many
brain:
93.1
cartilage:
55.4
vagus nerve:
51.7
AIP
ENSSSCG00000012904
ENSG00000110711
Aryl hydrocarbon receptor interacting protein
Low tissue specificity
Detected in all
AKAP6
ENSSSCG00000024517
ENSG00000151320
A-kinase anchoring protein 6
Tissue enhanced
Detected in many
brain:
31.0
heart:
30.2
skeletal muscle:
30.0
AKAP7
ENSSSCG00000036790
ENSG00000118507
A-kinase anchoring protein 7
Low tissue specificity
Detected in all
ALCAM
ENSSSCG00000011946
ENSG00000170017
Activated leukocyte cell adhesion molecule
Low tissue specificity
Detected in many
ALOX5
ENSSSCG00000010404
ENSG00000012779
Arachidonate 5-lipoxygenase
Tissue enhanced
Detected in many
brain:
15.5
ALOX5AP
ENSSSCG00000009330
ENSG00000132965
Arachidonate 5-lipoxygenase-activating protein precursor
Tissue enhanced
Detected in many
brain:
30.0
testis:
30.4
ALPL
ENSSSCG00000032607
ENSG00000162551
Alkaline phosphatase, liver/bone/kidney
Tissue enhanced
Detected in many
dura mater:
56.0
kidney:
77.7
AMIGO2
ENSSSCG00000000810
ENSG00000139211
Adhesion molecule with Ig like domain 2
Tissue enhanced
Detected in many
ovary:
33.6
ANKRD13B
ENSSSCG00000017793
ENSG00000198720
Ankyrin repeat domain 13B
Tissue enhanced
Detected in all
skeletal muscle:
42.9
ANKRD40
ENSSSCG00000038760
ENSG00000154945
Ankyrin repeat domain 40
Low tissue specificity
Detected in all
ANKRD65
ENSSSCG00000003346
ENSG00000235098
Ankyrin repeat domain 65
Tissue enhanced
Detected in many
brain:
20.0
choroid plexus:
10.6
fallopian tube:
7.9
ANLN
ENSSSCG00000016658
ENSG00000011426
Anillin actin binding protein
Tissue enriched
Detected in many
brain:
111.4
AP2A1
ENSSSCG00000003199
ENSG00000196961
Adaptor related protein complex 2 alpha 1 subunit
Low tissue specificity
Detected in all
APCDD1
ENSSSCG00000039797
ENSG00000154856
APC down-regulated 1
Tissue enhanced
Detected in all
epididymis:
55.5
APLN
ENSSSCG00000030843
ENSG00000171388
Apelin
Tissue enhanced
Detected in many
bone marrow:
26.1
brain:
80.8
APLNR
ENSSSCG00000038869
ENSG00000134817
Apelin receptor
Tissue enhanced
Detected in many
brain:
56.9
APOD
ENSSSCG00000011831
ENSG00000189058
Apolipoprotein D
Group enriched
Detected in many
brain:
308.3
cornea:
375.9
vagus nerve:
117.2
APOE
ENSSSCG00000003088
ENSG00000130203
Apolipoprotein E precursor
Tissue enriched
Detected in many
liver:
755.1
ARAP2
ENSSSCG00000008768
ENSG00000047365
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
Tissue enhanced
Detected in many
brain:
52.1
lymphoid tissue:
46.8
thyroid gland:
49.8
ARHGAP21
ENSSSCG00000011074
ENSG00000107863
Rho GTPase activating protein 21
Low tissue specificity
Detected in all
ARHGAP23
ENSSSCG00000018058
ENSG00000275832
Rho GTPase activating protein 23
Tissue enhanced
Detected in many
brain:
47.5
ARHGEF26
ENSSSCG00000024205
ENSG00000114790
Rho guanine nucleotide exchange factor 26
Tissue enhanced
Detected in all
smooth muscle:
49.9
ARL4C
ENSSSCG00000034293
ENSG00000188042
ADP-ribosylation factor-like protein 4C
Tissue enriched
Detected in many
ovary:
79.5
ARSB
ENSSSCG00000038535
ENSG00000113273
Arylsulfatase B
Tissue enhanced
Detected in many
brain:
56.3
kidney:
31.9
ASB1
ENSSSCG00000016340
ENSG00000065802
Ankyrin repeat and SOCS box containing 1
Low tissue specificity
Detected in all
ASPA
ENSSSCG00000017861
ENSG00000108381
Aspartoacylase
Tissue enhanced
Detected in many
brain:
56.0
kidney:
19.8
vagus nerve:
32.5
B4GALNT1
ENSSSCG00000000433
ENSG00000135454
Beta-1,4-N-acetyl-galactosaminyltransferase 1
Tissue enhanced
Detected in many
ovary:
43.6
thyroid gland:
23.9
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